species:   Rhsol
pid:       PID0479
parent:    Rhi-milR-129
paralog:   
locus:     KB317706.1:697495-697609
matures:   ['UGAGGCUAUGGACAUGGACGA', 'GUCUAAUCCGAAUCCUCAAC']
srr:       SRR1994874
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994874.cram KB317706.1:697495-697609

2 out of bounds
71 alignments
69 proper strand
66 stranded perfect matches

                   ***********************       **********************                                            
GGAAGCCAGGCAGGGAGACGGUGAGGCUAUGGACAUGGACGAUGACCAGUCGUCUAAUCCGAAUCCUCAACAGAACUCGUCGGUGCCUAGUACCUGUGCGUGUUUUUCCCUUGCU
........(((((((.((...(((((...((((..((((((((.....)))))))).))))...)))))..(((((.(((.(((((...)))))...))).))))))))))))))
---------------------UGAGGCUAUGGACAUGGACGA------------------------------------------------------------------------- l=21 a=0 c
---------------------------------------------------GUCUAAUCCGAAUCCUCAAC-------------------------------------------- l=20 a=0 c*
--------------------GUGAGGCUAUGGACAUGGACGAUGAC--------------------------------------------------------------------- l=26 a=28 ma
---------------------------------------------------GUCUAAUCCGAAUCCUCAAC-------------------------------------------- l=20 a=0 ma*

-------------------GGUGAGGCUAUGGACAUG------------------------------------------------------------------------------ l=18 a=1 
-------------------GGUGAGGCUAUGGACAUGGAC--------------------------------------------------------------------------- l=21 a=1 
--------------------GUGAGGCUAUGGACAUGG----------------------------------------------------------------------------- l=18 a=2 
--------------------GUGAGGCUAUGGACAUGGAC--------------------------------------------------------------------------- l=20 a=1 
--------------------GUGAGGCUAUGGACAUGGACG-------------------------------------------------------------------------- l=21 a=3 
--------------------GUGAGGCUAUGGACAUGGACGA------------------------------------------------------------------------- l=22 a=2 
--------------------GUGAGGCUAUGGACAUGGACGAU------------------------------------------------------------------------ l=23 a=9 
--------------------GUGAGGCUAUGGACAUGGACGAUG----------------------------------------------------------------------- l=24 a=15 
--------------------GUGAGGCUAUGGACAUGGACGAUGA---------------------------------------------------------------------- l=25 a=1 
--------------------GUGAGGCUAUGGACAUGGACGAUGAC--------------------------------------------------------------------- l=26 a=28 (ma)
--------------------GUGAGGCUAUGGACAUGGACGAUGAu--------------------------------------------------------------------- l=26 a=3 
----------------------GAGGCUAUGGACAUGGACGAUG----------------------------------------------------------------------- l=22 a=1 
----------------------------------------------------------------CCUCAACAGAACUCGUCGGUGCCU--------------------------- l=24 a=1 
-----------------------------------------------------------------CUCAACAGAACUCGUCGGU------------------------------- l=19 a=1 

mb-00111
ax-1011001
ku-01
ss-101011101100
fn-111
